If you would like to see your data/software/methods/protocols here, please email admin@clirpath-ai.org
Data
CLIRSPEC Community on Zenodo
https://zenodo.org/communities/clirspec/
Contributions are welcome to this repository from all those working in clinical spectroscopy. Zenodo offer a DataCite DOI for citation purposes. Please contact us if this is something you would like to take advantage of. There is no charge for the Zenodo service and uploads can exceed 50 GB.
Software packages
ChiToolbox
https://bitbucket.org/AlexHenderson/chitoolbox/
MATLAB toolbox for multivariate analysis and ensemble machine learning for infrared and Raman spectroscopies.
QuPath
https://qupath.github.io/
Standalone package for treatment of pathology images.
TIA Toolbox
https://tia-toolbox.readthedocs.io/
Standalone package for treatment of pathology images.
Data convertors
Agilent infrared in MATLAB
https://bitbucket.org/AlexHenderson/agilent-file-formats/
Agilent infrared in Python
https://github.com/AlexHenderson/agilent-ir-formats
Renishaw Raman in MATLAB (*.wdf format)
https://bitbucket.org/AlexHenderson/renishaw-file-formats/
Renishaw Raman in Python (*.wdf format)
https://github.com/alchem0x2A/py-wdf-reader
CLIRPath-AI online symposium
Welcome and Introduction to CLIRPath-AI
Peter Gardner – University of Manchester
https://www.youtube.com/watch?v=zys0ZFz_UVI&list=PLxfM27upDHNeIu3hzNn7jbDxLfZFc_Je-&index=1
Introduction to Spectral Pathology
Nick Stone – University of Exeter
https://www.youtube.com/watch?v=fMWa88A-KOk
State of AI in Spectral Pathology
Fayyaz Minhas/Shan Raza – University of Warwick
https://www.youtube.com/watch?v=FP1MbJ5uhhs
Challenges of AI/Machine Learning for Classification of Disease and Could Spectroscopy Help?
Adrienne Flanagan – UCL
https://www.youtube.com/watch?v=Web89x_doO4
Using Infrared Spectroscopy in the Molecular Stratification of Prostate Cancer
Ashwin Sachdeva – Cancer Research UK Manchester Institute
https://www.youtube.com/watch?v=gjBP1DbwqAA
Panel Discussion
Nick Stone, Fayyaz Minhas, Adrienne Flanagan, Ashwin Sachdeva
https://www.youtube.com/watch?v=wT6Pdn1ajFE